Classes

Beacon

A beacon represents whether any variant call in a variant set has a specific allele at a particular position.

BeaconsResourceApi

Not documented yet.

Call

A Call represents the determination of genotype with respect to a particular variant. It may include associated information such as quality and phasing. For example, a Call might assign a probability of 0.32 to the occurrence of a SNP named rs1234 in a call set with the name NA12345.

CallSet

A CallSet is a collection of variant calls. It belongs to a variant set.

CallsetsResourceApi

Not documented yet.

CoverageBucket

A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.

Dataset

A Dataset is a collection of genomic data.

DatasetsResourceApi

Not documented yet.

ExperimentalCreateJobRequest

The job creation request.

ExperimentalCreateJobResponse

The job creation response.

ExperimentalJobsResourceApi

Not documented yet.

ExperimentalResourceApi

Not documented yet.

ExportReadsetsRequest

The readset export request.

ExportReadsetsResponse

The readset export response.

ExportVariantsRequest

The variant data export request.

ExportVariantsResponse

The variant data export response.

GenomicRange

An inclusive, exclusive genomic coordinate range over a reference sequence.

GenomicsApi

Provides access to Genomics data.

Not documented yet.

HeaderSection

The header section of the BAM/SAM file.

ImportReadsetsRequest

The readset import request.

ImportReadsetsResponse

The readset import response.

ImportVariantsRequest

The variant data import request.

ImportVariantsResponse

The variant data import response.

Job

A Job represents an ongoing process that can be monitored for status information.

JobRequest

A summary representation of the service request that spawned the job.

JobsResourceApi

Not documented yet.

ListCoverageBucketsResponse

Not documented yet.

ListDatasetsResponse

The dataset list response.

Metadata

Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.

Program

Not documented yet.

Read

A Read is a group of bases that may or may not have been aligned to a reference. It contains quality information and other metadata.

ReadGroup

Not documented yet.

Readset

A Readset is a collection of Reads.

ReadsetsCoveragebucketsResourceApi

Not documented yet.

ReadsetsResourceApi

Not documented yet.

ReadsResourceApi

Not documented yet.

ReferenceBound

ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.

ReferenceSequence

Not documented yet.

SearchCallSetsRequest

The call set search request.

SearchCallSetsResponse

The call set search response.

SearchJobsRequest

The jobs search request.

SearchJobsResponse

The job search response.

SearchReadsetsRequest

The readset search request.

SearchReadsetsResponse

The readset search response.

SearchReadsRequest

The read search request.

SearchReadsResponse

The read search response.

SearchVariantSetsRequest

The search variant sets request.

SearchVariantSetsResponse

The search variant sets response.

SearchVariantsRequest

The variant search request.

SearchVariantsResponse

The variant search response.

Variant

A Variant represents a change in DNA sequence relative to some reference. For example, a Variant could represent a SNP or an insertion. Variants belong to a variant set.

VariantSet

A VariantSet represents a collection of Variants and their summary statistics.

VariantsetsResourceApi

Not documented yet.

VariantsResourceApi

Not documented yet.

Exceptions / Errors

ApiRequestError

Represents a general error reported by the API endpoint.

DetailedApiRequestError

Represents a specific error reported by the API endpoint.